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Global warming potential associated with Irish milk powder production

William Finnegan, Jamie Goggins, Aksana Chyzheuskaya, Xinmin Zhan

《环境科学与工程前沿（英文）》 2017年 第11卷 第3期 doi: 10.1007/s11783-017-0949-z

摘要： Climate change is an ever growing issue and a major concern worldwide. Both producers and processors need to address the issue now by reducing their carbon footprint. Additionally, if Ireland is to meet their climate and energy targets, as outlined in Food Harvest 2020, which outlines a range of objectives for the Irish agricultural sector, the efficient use of resources and fuels within the industry will need to be increased. In Ireland, agriculture accounts for 29.2% of the total greenhouse gas emissions (58.5 million tonnes CO eq). Therefore, in this paper, a single agri-food product, milk powder, is examined in order to estimate the global warming potential (GWP) associated with its manufacture using life cycle assessment. A cradle-to-processing factory gate analysis, which includes raw milk production, raw milk transportation to the processing factory, its processing into each product and product packaging, is assessed in this study using data collected circa 2013. The factories surveyed processed approximately 24% of the total raw milk processed in the Republic of Ireland in 2013, which was 5.83 billion liters. The average total GWP associated with the manufacture of milk powder is 9.731 kg CO eq·kg milk powder, which has a standard deviation of 2.26 kg CO eq·kg milk powder, for the life cycle stages analyzed in this study. The most significant contributor to GWP is raw milk production (84%), followed by dairy processing (14%), with the remainder of the life cycle stages contributing approximately 2%.

关键词： Dairy     Global warming potential     Ireland     Life cycle assessment     Milk powder     Milk production    

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A post-GWAS replication study confirming the association of

Shaohua YANG,Chao QI,Yan XIE,Xiaogang CUI,Yahui GAO,Jianping JIANG,Li JIANG,Shengli ZHANG,Qin ZHANG,Dongxiao SUN

《农业科学与工程前沿（英文）》 2014年 第1卷 第4期   页码 321-330 doi: 10.15302/J-FASE-2014037

摘要： Genome-wide association studies with an Illumina Bovine50K chip have detected 105 SNPs associated with one or multiple milk production traits in the Chinese Holstein population. Of these, 38 significant SNPs detected with high confidence by both L1-TDT and MMRA methods were selected to further mine potential key genes affecting milk yield and milk composition. By blasting the flanking sequences of these 38 SNPs with the bovine genome sequence combined with comparative genomics analysis, 26 genes were found to contain or be near to such SNPs. Among them, the gene is merely 87 bp away from the significant SNP, Hapmap30383-BTC-005848. Hence, we report herein genotype-phenotype associations to further validate the genetic effects of the gene. By pooled DNA sequencing of 14 unrelated Holstein sires, a total of 18 with seven novel SNPs were identified. Among them, nine SNPs were in the 5′ regulatory region, one in exon 6 and the other in the 3′ UTR and 3′ regulatory region. A total of nine of these identified SNPs were successfully genotyped and analyzed by mass spectrometry for association with five milk production traits in an independent resource population. The results showed that these SNPs were statistically significant for more than two traits [ <(0.0001-0.0267)]. In addition, mRNA expression analyses revealed that was ubiquitous in eight different tissues, with a relatively higher expression level in the mammary gland than in other tissues. These findings, therefore, provide strong evidence for association of variants with milk yield and milk composition traits and may be applied in Chinese Holstein breeding programs.

关键词： GWAS     functional annotation     Chinese Holstein     milk production traits     C14H8orf33 gene     single nucleotide polymorphisms     association study    

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INTENSIFICATION OF GRASSLAND-BASED DAIRY PRODUCTION AND ITS IMPACTS ON LAND, NITROGEN AND PHOSPHORUS

Jouke OENEMA, Oene OENEMA

《农业科学与工程前沿（英文）》 2021年 第8卷 第1期   页码 130-147 doi: 10.15302/J-FASE-2020376

摘要： Many grassland-based dairy farms are intensifying production, i.e., produce more milk per ha of land in response to the increasing demand for milk (by about 2% per year) in a globalized market. However, intensive dairy farming has been implicated for its resources use, ammonia and greenhouse gas emissions, and eutrophication impacts. This paper addresses the question of how the intensity of dairy production relates to N and P surpluses and use efficiencies on farms subjected to agri-environmental regulations. Detailed monitoring data were analyzed from 2858 grassland-based dairy farms in The Netherlands for the year 2015. The farms produced on average 925 Mg·yr milk. Milk production per ha ranged from<10 to>30 Mg·ha ·yr . Purchased feed and manure export strongly increased with the level of intensification. Surpluses of N and P at farm level remained constant and ammonia emissions per kg milk decreased with the level of intensification. In conclusion, N and P surpluses did not differ much among dairy farms greatly differing in intensity due to legal N and P application limits and obligatory export of manure surpluses to other farms. Further, N and P use efficiencies also did not differ among dairy farms differing in intensity provided the externalization of feed production was accounted for. This paper provides lessons for proper monitoring and control of N and P cycling in dairy farming.

关键词： ammonia     externalization     feed     forage maize     front runners     manure production     milk yield     nitrogen surplus    

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Genomic regions under selection for important traits in domestic horse breeds

Xuexue LIU, Yuehui MA, Lin JIANG

《农业科学与工程前沿（英文）》 2017年 第4卷 第3期   页码 289-294 doi: 10.15302/J-FASE-2017155

摘要： Horses were domesticated 5500 years ago, thousands of years later than other domestic animals; however, in this relatively short period, domestic horses have had a great impact on human history by accelerating civilization, revolutionizing warfare and advancing agricultural production. Modern breeding using marker-assisted selection has greatly accelerated breeding progress. Therefore, identification of genetic markers underlying the traits of interest in domestic horses is the basis for the modern breeding system. In this review, we present an overview of genetic mapping studies and genome wide analyses to identify the genomic regions targeted by positive selection for four important aspects of horses, coat color, racing performance, gait and height at withers. The locus, for example, has been shown to be the main gene responsible for chestnut color, and the locus has been shown to control the muscle fiber growth in racing breeds. The missense mutation in is the causal mutation for the alternate gaits in horses. Height at withers, a quantitative trait, was mapped to four major loci (3:105547002, 6:81481064, 9:75550059 and 11:232597 32) that can explain 83% of the height variations in domestic horses.

关键词： horse     coat color     racing performance     gait     height    

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Perfluoroalkane acids in human milk under the global monitoring plan of the Stockholm Convention on Persistent

《环境科学与工程前沿（英文）》 2022年 第16卷 第10期 doi: 10.1007/s11783-022-1541-8

摘要：

● Perfluorooctanesulfonic acid and perfluorooctanoic acid highest in human milk.

关键词： Human biomonitoring     Human breast milk     LC-MS/MS analysis     Lifestyle parameters    

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Imaging technologies for plant high-throughput phenotyping: a review

Yong ZHANG, Naiqian ZHANG

《农业科学与工程前沿（英文）》 2018年 第5卷 第4期   页码 406-419 doi: 10.15302/J-FASE-2018242

摘要：

Phenomics studies a variety of phenotypic plant traits and is the key to understanding genetic functions and environmental effects on plants. With the rapid development of genomics, many plant phenotyping platforms have been developed to study complex traits related to the growth, yield, and adaptation to biotic or abiotic stress, but the ability to acquire high-throughput phenotypic data has become the bottleneck in the study of plant genomics. In recent years, researchers around the world have conducted extensive experiments and research on high-throughput, image-based phenotyping techniques, including visible light imaging, fluorescence imaging, thermal imaging, spectral imaging, stereo imaging, and tomographic imaging. This paper considers imaging technologies developed in recent years for high-throughput phenotyping, reviews applications of these technologies in detecting and measuring plant morphological, physiological, and pathological traits, and compares their advantages and limitations.

关键词： high-throughput phenotyping     imaging technology     morphological traits     pathological traits     physiological traits    

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Recent advances in understanding genetic variants associated with economically important traits in sheep

Song-Song XU, Meng-Hua LI

《农业科学与工程前沿（英文）》 2017年 第4卷 第3期   页码 279-288 doi: 10.15302/J-FASE-2017151

摘要： Sheep are one of the most economically important domesticated animals for human society. However, genetic improvements for the key traits associated with meat, growth, milk, wool, reproduction, horns and tails progress slowly using conventional crossbreeding methods. With the development and utilization of high-throughput screening technologies over the last decade, a list of functional genes and genetic variants associated with these traits has been identified. This review covers recent genome-wide studies on sheep productive traits using high-throughput screening technologies, including those based on single-nucleotide polymorphisms and copy number variants at the whole-genome level (e.g., genome-wide association studies), transcriptome and DNA methylation sequences. Additionally, comprehensive information on functional genes and genetic variants associated with economically important traits in sheep is provided.

关键词： sheep     high-throughput screening     productive traits     genome-wide studies    

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Expression of recombinant human butyrylcholinesterase in the milk of transgenic mice

Dan LU,Shengzhe SHANG,Shen LIU,Ying WU,Fangfang WU,Tan TAN,Qiuyan LI,Yunping DAI,Xiaoxiang HU,Yaofeng ZHAO,Ning LI

《农业科学与工程前沿（英文）》 2014年 第1卷 第3期   页码 179-184 doi: 10.15302/J-FASE-2014020

摘要： Butyrylcholinesterase (BCHE) is a natural bioscavenger that protects humans against organophosphate toxicity. Due to the limited yield of human BCHE (hBCHE) when purifying from human plasma, it is necessary to find an alternative method to produce this protein. One potential method is to produce transgenic livestock that make modified milk containing high concentration of hBCHE. In this study, we cloned the gene into a human lactoferrin (hLF) bacterial artificial chromosome (BAC) construct to make a hLF-hBCHE BAC construct. Subsequently, we injected the BAC construct into pronuclei of mouse fertilized embryos and generated transgenic mice. Expression analysis showed that recombinant hBCHE (rhBCHE) was expressed efficiently in the mammary gland of the transgenic mice and the concentration of rhBCHE in the milk of individual mice ranged from 76±12 to 159±28 mg·L . Protein function tests showed that rhBCHE has the same enzymatic activity as the native hBCHE. Our results pave the way for making transgenic livestock to produce large quantities of rhBCHE.

关键词： recombinant human butyrylcholinesterase (rhBCHE)     human lactoferrin bacterial artificial chromosome (hLF BAC)     transgenic mice     milk    

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Effects of previous drying of sediment on root functional traits and rhizoperformance of emerged macrophytes

《环境科学与工程前沿（英文）》 2021年 第15卷 第6期 doi: 10.1007/s11783-021-1427-1

摘要：

• Sediment desiccation alters morphological characteristics of aquatic sediment.

关键词： Fibrous-root macrophytes     Thick-root macrophytes     Nutrients removal     Wet sediment     Dried-rewetted sediment    

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A genome-wide association study of five meat quality traits in Yorkshire pigs

Qian DONG,Huiying LIU,Xinyun LI,Wei WEI,Shuhong ZHAO,Jianhua CAO

《农业科学与工程前沿（英文）》 2014年 第1卷 第2期   页码 137-143 doi: 10.15302/J-FASE-2014014

摘要： Meat quality is an important trait in the pig industry. To identify genomic regions and haplotype blocks responsible for meat quality traits in pigs, a genome-wide association study was conducted for five traits including intramuscular fat content, pH at 45 min and 24 h, drip loss within 24 h and water-holding capacity in 231 Yorkshire barrows using illumina porcine 60k SNP chips. The results showed that a total of 344 single nucleotide polymorphisms (SNP) were significantly associated with five meat quality traits ( <1×10 ). Moreover, 323 SNPs were within the reported QTL regions, of which 21 were novel. Also, 158 SNPs fell into the proximal region of meat quality related genes. In addition, 25 haplotype blocks based on 116 SNPs were revealed with SNP combination patterns for five traits. Our study added new SNP information for identification of meat quality traits in pigs and will help elucidate the mechanisms of meat quality in pigs.

关键词： Pig     GWAS     meat quality trait     SNP    

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BULKED SEGREGANT RNA SEQUENCING (BSR-SEQ) IDENTIFIES A NOVEL ALLELE ASSOCIATED WITH WEEPING TRAITS IN

《农业科学与工程前沿（英文）》 2021年 第8卷 第2期

摘要：

Weeping species are used both as ornamental plants and for breeding dwarf plant types. However, exploration of casual genes controlling weeping traits is rather limited. Here, we identified individuals with contrasting phenotypes from an F1 bi-parental mapping population of Prunus mume which was developed from a cross between the upright cultivar ‘Liuban’ and the weeping cultivar ‘Fentai Chuizhi’. Bulked segregant RNA sequencing was used and five QTLs on Chromosome 7 were identified. The Pm024074(PmUGT72B3) allele, belonging to the UDP-glycosyltransferase superfamily containing the coniferyl-alcohol glucosyltransferase domain, was identified in a genomic region overlapping with a previously identified QTL, and had a synonymous transition of T66(upright) to C (weeping) in the coding sequence and a 470-bp deletion in the promoter region. Pm024074 had exceptionally high expression in buds and stems of weeping P. mume. Weighted correlation network analysis indicates that genes neighboring Pm024074 were significantly associated with plant architecture. In addition, a reliable single nucleotide polymorphism marker was developed based on the variation in the Pm024074 gene, providing precise marker-assisted breeding for weeping traits. This study provides insights into the genetic mechanism governing the weeping trait in P. mume, and indicates potential applications for the manipulation of tree architecture.

关键词： BSR-seq / PmUGT72B3 / Prunus mume / UDP-glycosyltransferase / weeping shoots / WGCNA    

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CH4 and N2O emissions from double-rice cropping system as affected by Chinese milk

Heshui XU,Dengyun LI,Bo ZHU,Kai ZHANG,Yadong YANG,Chen WANG,Ying JIANG,Zhaohai ZENG

《农业科学与工程前沿（英文）》 2017年 第4卷 第1期   页码 59-68 doi: 10.15302/J-FASE-2017137

摘要： Chinese milk vetch (CMV) and rice straw (RS) were incorporated into soil to substitute for synthetic N fertilizers and to maintain soil fertility. However, little is known about the integrated impacts of CMV and RS incorporation on CH and N O emissions in double-rice cropping systems in southern China. A field experiment was conducted to estimate the integrated impacts of CMV and RS incorporation in the early- and late-rice seasons on CH and N O emissions. All treatments received uniform N inputs, 6%–37% of which was replaced by CMV and RS crop residue. CMV and/or RS incorporation produced equivalent or slightly more grain yield, while reducing N O emissions by 3%–43%. However, both CMV and RS incorporation increased CH emissions. Annual CH emissions ranged from 321 to 614 kg·hm from CMV and RS amendment treatments, which were 1.5–2.9 times higher than that from synthetic N. Compared with single synthetic N fertilizer, incorporation of CMV and/or RS increased GWP and yield-scaled GWP by 45%–164% and 45%–153%, respectively. Our results demonstrate CMV and RS amendments replacing N fertilizer, maintained stable yield, mitigated N O emission, but enhanced CH emission. Further study is needed on crop residue management in double-cropping rice systems.

关键词： Chinese milk vetch     CH4     double-rice cropping system     grain yield     N2O     rice straw    

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A review of traditional and novel detection techniques for melamine and its analogues in foods and animal feed

Mengshi LIN,

《化学科学与工程前沿（英文）》 2009年 第3卷 第4期   页码 427-435 doi: 10.1007/s11705-009-0244-z

摘要： Melamine, a nitrogen-rich chemical, has received much attention in recent years due to a series of highly publicized food safety incidents, including 2007 pet food recalls in North America and 2008 melamine contamination in milk, infant formula, and other milk-derived products in China. Current analytical methods for testing melamine are time-consuming, expensive, and labor-intensive. Therefore, there is an increasing interest in the food science and analytical chemistry field to develop simple, quick, sensitive, and cost-effective methods for detection of melamine and its analogues (e.g., cyanuric acid, melamine cyanurate, ammelide, and ammeline) in food ingredients, processed food, and animal feed. This review aims to summarize traditional and novel analytical techniques that have been used or show great potential to detect, characterize, and quantify melamine and its analogues in foods and animal feed.

关键词： milk-derived     Melamine     labor-intensive     cyanurate     time-consuming    

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BULKED SEGREGANT RNA SEQUENCING (BSR-SEQ) IDENTIFIES A NOVEL ALLELE ASSOCIATED WITH WEEPING TRAITS IN

Xiaokang ZHUO, Tangchun ZHENG, Zhiyong ZHANG, Suzhen LI, Yichi ZHANG, Lidan SUN, Weiru YANG, Jia WANG, Tangren CHENG, Qixiang ZHANG

《农业科学与工程前沿（英文）》   页码 196-214 doi: 10.15302/J-FASE-2020379

摘要： Weeping species are used both as ornamental plants and for breeding dwarf plant types. However, exploration of casual genes controlling weeping traits is rather limited. Here, we identified individuals with contrasting phenotypes from an F bi-parental mapping population of which was developed from a cross between the upright cultivar ‘Liuban’ and the weeping cultivar ‘Fentai Chuizhi’. Bulked segregant RNA sequencing was used and five QTLs on Chromosome 7 were identified. The ( ) allele, belonging to the UDP-glycosyltransferase superfamily containing the coniferyl-alcohol glucosyltransferase domain, was identified in a genomic region overlapping with a previously identified QTL, and had a synonymous transition of T (upright) to C (weeping) in the coding sequence and a 470-bp deletion in the promoter region. had exceptionally high expression in buds and stems of weeping . Weighted correlation network analysis indicates that genes neighboring were significantly associated with plant architecture. In addition, a reliable single nucleotide polymorphism marker was developed based on the variation in the gene, providing precise marker-assisted breeding for weeping traits. This study provides insights into the genetic mechanism governing the weeping trait in , and indicates potential applications for the manipulation of tree architecture.

关键词： BSR-seq     PmUGT72B3     Prunus mume     UDP-glycosyltransferase     weeping shoots     WGCNA    

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面向热带地区植物修复的植物性状研究 Article

Xiangting Cleo Chen, Liling Huang, Tze Hsien Agnes Chang, Bee Lian Ong, Say Leong Ong, Jiangyong Hu

《工程（英文）》 2019年 第5卷 第5期   页码 841-848 doi: 10.1016/j.eng.2019.07.019

摘要：

水是一种有限而宝贵的资源。新加坡的国家水源有4种补给方式，其中之一是自然降水。雨水径流会收集污染物，并将其富集到排水系统和水库中。在当地雨水径流中发现的主要富营养污染物包括硝酸盐和磷酸盐，这些富营养污染物可能导致富营养化。在有植物存在的情况下，生物滞留系统可以有效去除这些污染物。本文探讨了植物特性对雨水径流中营养性污染物的植物修复作用，并将其应用于生物防护系统中。所研究的植物物种在叶绿素含量、叶片绿色的浓度、生物量的产生以及硝酸盐和磷酸盐去除方面表现出了差异。一般而言，干生物量与硝酸盐和磷酸盐的去除程度相关（r = 0.339~0.501）。本地树种的根、叶和总干生物量显示出与硝酸盐去除程度之间的中等至强相关性（r 分别为0.811、0.657和0.727）。速生植物的叶片干生物量与两种污染物的去除程度也显示出中等至强相关性（r 分别为0.707和0.609）。低生长植株的根系生物量与磷的去除有很强的相关性（r = 0.707），但与硝酸盐去除的相关性较弱（r = 0.557）。这些结果对于选择用于生物滞留系统的植物是有价值的。

关键词： 氮     磷     植物性状     生物保留系统     雨水     热带植物     富营养污染物     本土植物    

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标题 作者 时间 类型 操作

Global warming potential associated with Irish milk powder production

William Finnegan, Jamie Goggins, Aksana Chyzheuskaya, Xinmin Zhan

期刊论文

A post-GWAS replication study confirming the association of

Shaohua YANG,Chao QI,Yan XIE,Xiaogang CUI,Yahui GAO,Jianping JIANG,Li JIANG,Shengli ZHANG,Qin ZHANG,Dongxiao SUN

期刊论文

INTENSIFICATION OF GRASSLAND-BASED DAIRY PRODUCTION AND ITS IMPACTS ON LAND, NITROGEN AND PHOSPHORUS

Jouke OENEMA, Oene OENEMA

期刊论文

Genomic regions under selection for important traits in domestic horse breeds

Xuexue LIU, Yuehui MA, Lin JIANG

期刊论文

Perfluoroalkane acids in human milk under the global monitoring plan of the Stockholm Convention on Persistent

期刊论文

Imaging technologies for plant high-throughput phenotyping: a review

Yong ZHANG, Naiqian ZHANG

期刊论文

Recent advances in understanding genetic variants associated with economically important traits in sheep

Song-Song XU, Meng-Hua LI

期刊论文

Expression of recombinant human butyrylcholinesterase in the milk of transgenic mice

Dan LU,Shengzhe SHANG,Shen LIU,Ying WU,Fangfang WU,Tan TAN,Qiuyan LI,Yunping DAI,Xiaoxiang HU,Yaofeng ZHAO,Ning LI

期刊论文

Effects of previous drying of sediment on root functional traits and rhizoperformance of emerged macrophytes

期刊论文

A genome-wide association study of five meat quality traits in Yorkshire pigs

Qian DONG,Huiying LIU,Xinyun LI,Wei WEI,Shuhong ZHAO,Jianhua CAO

期刊论文

BULKED SEGREGANT RNA SEQUENCING (BSR-SEQ) IDENTIFIES A NOVEL ALLELE ASSOCIATED WITH WEEPING TRAITS IN

期刊论文

CH4 and N2O emissions from double-rice cropping system as affected by Chinese milk

Heshui XU,Dengyun LI,Bo ZHU,Kai ZHANG,Yadong YANG,Chen WANG,Ying JIANG,Zhaohai ZENG

期刊论文

A review of traditional and novel detection techniques for melamine and its analogues in foods and animal feed

Mengshi LIN,

期刊论文

BULKED SEGREGANT RNA SEQUENCING (BSR-SEQ) IDENTIFIES A NOVEL ALLELE ASSOCIATED WITH WEEPING TRAITS IN

Xiaokang ZHUO, Tangchun ZHENG, Zhiyong ZHANG, Suzhen LI, Yichi ZHANG, Lidan SUN, Weiru YANG, Jia WANG, Tangren CHENG, Qixiang ZHANG

期刊论文

面向热带地区植物修复的植物性状研究

Xiangting Cleo Chen, Liling Huang, Tze Hsien Agnes Chang, Bee Lian Ong, Say Leong Ong, Jiangyong Hu

期刊论文